PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG011600.7.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 341aa    MW: 35873.7 Da    PI: 5.0282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG011600.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000511952321254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +r+ +++  L +++ +      +K + a++L++++ YI+ L
  Pavir.5KG011600.7.p 195 RKERLGDRITALHQIVSPF-----GKTDTASVLQETISYISFL 232
                          6678889999999999998.....8***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.884183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-5193237No hitNo description
SuperFamilySSF474593.27E-9193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-5193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKMPPLSSSS MLLPQHLLQI  60
SSDLAPDEVN ASTATSLASS DLHDGRESNM PESWSQLLLG GLVGDHERYS AATALRSKGL  120
EGPPNMPQAA AAYNLYGHGG GEEIQTSGTN KSQAPEVKNH HSDNSSDGNS TASGSAPKKA  180
RVQTSSSAQS TLKVRKERLG DRITALHQIV SPFGKTDTAS VLQETISYIS FLLSQIEVLS  240
LPYLGGHGNG NSMQQHHTVA SLLNRSTSNG MAEAEASTEQ QEINNNGGGD DEEGSTKDLR  300
GRGLCLVPVS CTSHLAGDDS DFWAVAAAPP PPPPLGIVWR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.258240.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337201e-104BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds.
GenBankBT0403171e-104BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds.
GenBankBT0414191e-104BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967407.11e-175PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBLK3XJ581e-175K3XJ58_SETIT; Uncharacterized protein
STRINGSi001931m1e-175(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-38bHLH family protein